| Registro completo |
| Provedor de dados: |
ArchiMer
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| País: |
France
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| Título: |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
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| Autores: |
Alberti, Adriana
Poulain, Julie
Engelen, Stefan
Labadie, Karine
Romac, Sarah
Ferrera, Isabel
Albini, Guillaume
Aury, Jean-marc
Belser, Caroline
Bertrand, Alexis
Cruaud, Corinne
Da Silva, Corinne
Dossat, Carole
Gavory, Frederick
Gas, Shahinaz
Guy, Julie
Haquelle, Maud
Jacoby, E'Krame
Jaillon, Olivier
Lemainque, Arnaud
Pelletier, Eric
Samson, Gaelle
Wessner, Mark
Acinas, Silvia G.
Royo-llonch, Marta
Cornejo-castillo, Francisco M.
Logares, Ramiro
Fernandez-gomez, Beatriz
Bowler, Chris
Cochrane, Guy
Amid, Clara
Ten Hoopen, Petra
De Vargas, Colomban
Grimsley, Nigel
Desgranges, Elodie
Kandels-lewis, Stefanie
Ogata, Hiroyuki
Poulton, Nicole
Sieracki, Michael E.
Stepanauskas, Ramunas
Sullivan, Matthew B.
Brum, Jennifer R.
Duhaime, Melissa B.
Poulos, Bonnie T.
Hurwitz, Bonnie L.
Pesant, Stephane
Karsenti, Eric
Wincker, Patrick
Bork, Peer
Boss, Emmanuel
Follows, Michael
Gorsky, Gabriel
Hingamp, Pascal
Iudicone, Daniele
Karp-boss, Lee
Not, Fabrice
Raes, Jeroen
Sardet, Christian
Speich, Sabrina
Stemmann, Lars
Sunagawa, Shinichi
Bazire, Pascal
Beluche, Odette
Besnard-gonnet, Marielle
Bordelais, Isabelle
Boutard, Magali
Dubois, Maria
Dumont, Corinne
Ettedgui, Evelyne
Fernandez, Patricia
Garcia, Esperance
Aiach, Nathalie Giordanenco
Guerin, Thomas
Hamon, Chadia
Brun, Elodie
Lebled, Sandrine
Lenoble, Patricia
Louesse, Claudine
Mahieu, Eric
Mairey, Barbara
Martins, Nathalie
Megret, Catherine
Milani, Claire
Muanga, Jacqueline
Orvain, Celine
Payen, Emilie
Perroud, Peggy
Petit, Emmanuelle
Robert, Dominique
Ronsin, Murielle
Vacherie, Benoit
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| Data: |
2017-08
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| Ano: |
2017
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| Resumo: |
A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009-2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www. ebi. ac. uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world's planktonic ecosystems.
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| Tipo: |
Text
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| Idioma: |
Inglês
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| Identificador: |
https://archimer.ifremer.fr/doc/00600/71256/69634.pdf
https://archimer.ifremer.fr/doc/00600/71256/69635.zip
DOI:10.1038/sdata.2017.93
https://archimer.ifremer.fr/doc/00600/71256/
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| Editor: |
Nature Publishing Group
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| Relação: |
info:eu-repo/grantAgreement/EC/FP7/287589/EU//MICRO B3
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| Formato: |
application/pdf
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| Fonte: |
Scientific Data (2052-4463) (Nature Publishing Group), 2017-08 , Vol. 4 , N. 170093 , P. 20p.
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| Direitos: |
info:eu-repo/semantics/openAccess
restricted use
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